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Does turning on Shop Pay add anything to what a Shopify store pays in fees?

Verified 28 September 2026 · SaaS COMPASS

Summary

No. Shop Pay is part of Shopify Payments, and Shop Pay transactions are processed at your normal Shopify Payments rates. The fee goes up only when a buyer picks Shop Pay Installments. The bigger surprise for most stores is refunds: the original processing fee stays with Shopify when you give the money back.

One $80 order, five outcomes

A US store on Basic takes an $80 online order on a US card. At 2.9% + 30¢ the fee is $2.62.

  • Paid with Shop Pay. Same $2.62. There is no separate Shop Pay fee.
  • Paid with Shop Pay Installments. A higher fee that "also includes the standard Shopify Payments processing fee." The help center does not print the rate; it is shown under View payment rates in your admin. You still get the full $80, less that fee, within 1 to 3 business days.
  • Refunded in full. No new fee for the refund, but the $2.62 is not returned. The buyer gets $80 back and the store is out $2.62. On an installments order, the installments fee is not returned either.
  • Chargeback, lost. The store loses the $80 and pays a $15 chargeback fee on top.
  • Chargeback, won. The $80 and the $15 fee are returned.

At 500 orders a month with 15 refunds, that is $39.30 a month in fees the store never sees again.

Installments: the conditions

Turning on Shop Pay Installments costs nothing. It needs both Shopify Payments and Shop Pay active, and in the United States it covers orders from $35 to $30,000 including discounts, shipping, and taxes. In-store installments carry the same rates and order limits as online. Buyers may pay 0 to 36% APR, with no late fees.

Chargeback timing

You usually have 7 to 21 days to put together a response, and a decision can take up to 75 days after you submit it.

When the money arrives

US payouts have a minimum settlement time of 3 business days and no minimum payout amount. You can pick daily, weekly, or monthly payouts. Payments captured Friday through Sunday go out as one payout, and a payout can take another 1 to 3 days to show in your bank. Accounts Shopify deems higher risk can wait 5 to 20 business days.

Rates by plan, and the extra fee for using PayPal or another outside provider, are worked through in our article on Shopify's processing fees and plans.

Sources

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